Disease semantic similarity

Author: peye

August undefined, 2024

WebJan 13, 2024 · A disease semantic similarity kernel is a 313 × 313 matrix M p,2. The element M p ,2 ( i , j ) is the similarity between disease p i and disease p j . The disease semantic similarity is accessible by MimMiner ( van Driel et al., 2006 ), which is a text mining approach to quantify phenotype relationships between human disease … WebJul 31, 2024 · Disease semantic similarity between two diseases can be calculated using their DAGs, which were constructed by mapping their disease names into MeSH descriptors. MeSH descriptors were obtained from the National Library of Medicine [ 21] ( http://www.nlm.nih.Gov/ ), and the disease category of which was used here.

Deepening the knowledge of rare diseases dependent on …

WebSep 27, 2024 · According to previous works, the similarity calculation of metabolite similarity can be divided into two ways: one is the functional similarity of disease calculated by disease semantic similarity, the other is the Gaussian interaction profile (GIP) kernel similarity of metabolites. WebJun 29, 2011 · We used the disease similarity application to demonstrate the relationship between 128 different DO cancer terms. The hierarchical clustering of these 128 … quaility tool broussard

DOSE: Disease Ontology Semantic and Enrichment analysis

WebJul 26, 2016 · Mathur, S. & Dinakarpandian, D. Finding disease similarity based on implicit semantic similarity. J Biomed Inform 45, 363–371 (2012). Article Google Scholar Lin, D. An information-theoretic ... WebApr 1, 2012 · Disease similarity is estimated by using an ontological metric to measure semantic similarity between Gene Ontology (GO) processes associated with … WebApr 20, 2024 · Disease semantic similarity The Medical Subject Heading (MeSH) database is a strict disease classification system, which can be used to effectively study … quaility rated frypan

Predicting lncRNA-disease associations and constructing lncRNA …

IDSSIM: an lncRNA functional similarity ... - BMC Bioinformatics

WebSep 20, 2024 · Functional similarity between molecules results in similar phenotypes, such as diseases. Therefore, it is an effective way to reveal the function of molecules based on their induced diseases. However, the lack of a tool for obtaining the similarity score of pair-wise disease sets (SSDS) limits this type of application. Here, we introduce DisSetSim, … WebThis package implements five methods proposed by Resnik, Schlicker, Jiang, Lin and Wang respectively for measuring semantic similarities among DO terms and gene products. … quailo iii andrew tsengWebMar 17, 2024 · This paper presents an improved approach based on the Longest Common Subsequence (LCS) and semantic similarity for automatic Chinese diagnoses, … quaility truck of green bay

"WebJun 10, 2015 · Constructing lncRNA functional similarity network based on lncRNA-disease associations and disease semantic similarity ... biological datasets is one of the most important and popular topics in the fields of both lncRNAs and complex diseases. Functional similarity network construction could benefit the model development for both … " - Disease semantic similarity

Disease semantic similarity

DisSetSim: an online system for calculating similarity between disease …

WebJul 12, 2024 · Because we had three different disease similarity networks (disease functional similarity, disease semantic similarity and disease GIP kernel similarity), the m was equal to 3. After iterative update, the ultimate disease similarity matrix S d could be obtained as follows: (19) WebJan 26, 2024 · identification for rare diseases. In particular, measurements of semantic similarity between phenotype profiles have been used to generate hypotheses and predict diagnoses [4]. Semantic similarity is a measure of how similar two classes are, derived from analysis of the taxonomic structure of an ontology [5].

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WebFeb 5, 2024 · Semantic similarity is a valuable tool for analysis in biomedicine. When applied to phenotype profiles derived from clinical text, they have the capacity to enable …

WebMar 3, 2024 · 'Semantic similarity' leads to novel drug candidates for Parkinson's disease AI compares how compounds are described to find new drug leads Date: March 3, 2024 … WebJun 29, 2011 · Background The construction of the Disease Ontology (DO) has helped promote the investigation of diseases and disease risk factors. DO enables researchers …

WebJun 12, 2024 · Computational methods utilizing HPO for clinical differential diagnostics can be generally grouped into two types: semantic similarity-based methods, such as Phenomizer 4 and Disease... WebOct 1, 2024 · Semantic similarity can be used to generate statistical evidence for disease causation analogous to the traditional approach of primarily defining disease entities through similar clinical features. Previous article in issue; Next article in issue; Keywords. electronic medical records.

WebApr 1, 2012 · Disease similarity is estimated by using an ontological metric to measure semantic similarity between Gene Ontology (GO) processes associated with diseases. The biological processes (GO processes) are determined based on the genes known to be involved in each disease.

WebJun 23, 2024 · There are different approaches that use semantic similarity to calculate how similar two diseases are using Gene Ontology terms , the Disease Ontology and the Human Phenotype Ontology (HPO) . Here, we consider that phenotypically similar angiogenesis-dependent diseases can be grouped to determine which genes they have … quaility inn hotels near gulf shoresWebMar 5, 2024 · Identifying patterns of such “semantic similarity” is one of the core skills of IBM Watson for Drug Discovery, an AI program run on a supercomputer that analyzes the published literature for patterns of keywords, phrases, and juxtapositions. quailridge poodles and doodlesWebJul 31, 2024 · Disease semantic similarity. Disease semantic similarity between two diseases can be calculated using their DAGs, which were constructed by mapping their … quails cherry hillWebFirstly, a bi-directional heterogeneous microbial disease network is constructed by integrating multiple similarities, including Gaussian kernel similarity, microbial function similarity,... quailparkoflynnwood.com/evWebOct 6, 2024 · The technical storage or access is strictly necessary for the legitimate purpose of enabling the use of a specific service explicitly requested by the subscriber or user, or for the sole purpose of carrying out the transmission of a communication over an electronic communications network. quails freehold njWebMay 21, 2024 · Results: In this paper we propose a novel method called GPSim to effectively deduce the semantic similarity of diseases. In particular, GPSim calculates … quailway cottage airbnbWebJul 31, 2009 · Semantic similarity has become a valuable tool for validating the results drawn from biomedical studies such as gene clustering, gene expression data analysis, prediction and validation of molecular interactions, and disease gene prioritization. We review semantic similarity measures applied to biomedical ontologies and propose their ... quailspringsmalltheatresokc